PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.328060.1
Common NameCsa_6G373190, LOC101217750
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 333aa    MW: 36517.2 Da    PI: 6.0055
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.328060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.14.9e-1651100255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h+  E+rRR++iN++f+ Lr+l+P++    ++K + a+ L +++eY+++Lq
  Cucsa.328060.1  51 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFLLEVIEYVQYLQ 100
                     899*************************9....8*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.0E-2347120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-1847119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.0444999IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.41E-1551104No hitNo description
PfamPF000102.3E-1351100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-1255105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MRTGKSNQED DEYDEDELVG KREGPSSTSN AISSIGNSKD AKNNDKANAI RSKHSVTEQR  60
RRSKINERFQ ILRDLIPHSD QKRDTASFLL EVIEYVQYLQ EKVQKYEGSY QNWSGEPTKL  120
IPWRNSHWRM QTFVGHQQSV KNGSASGPTY SGKFDDNNIS ISPAMLASSQ NPLDSHSGRD  180
ILQEADITNK VPHPMSLEGN MHASIRSDTV LDHSLHIPIS DPQATECPIT NNASNQPEEM  240
GIEGGTISVS SVYSEGFMNS LAQALQSTGL DLSQASISVQ IDLGKRANKG MPFGTPIFKE  300
TGNPSSNHPA MANVGDLGSG DDSEQAKKRL RT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657414.10.0PREDICTED: transcription factor BIM2
SwissprotQ9CAA41e-106BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A0A0KD980.0A0A0A0KD98_CUCSA; Uncharacterized protein
STRINGGLYMA02G13670.11e-134(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-100BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]